Detailed information of SNP:
|
SNP ID:
sf0211516191(Gbrowse)
Chromosome: chr02 Position: 11516191 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 76.40% | 23.60% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 457 | 33.26% | 66.74% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 308 | 44.81% | 55.19% |
| Tropical Japonica | 85 | 3.53% | 96.47% |
| Japonica Intermediate | 64 | 17.19% | 82.81% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211516191 | A->T | INTERGENIC | None |