Detailed information of SNP:



SNP ID: sf0211534071(Gbrowse)

Chromosome: chr02

Position: 11534071
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 65.89% 34.11%
All Indica799 99.62% 0.38%
All Japonica497 9.05% 90.95%
Aus67 100.00% 0.00%
Indica I375 99.73% 0.27%
Indica II213 100.00% 0.00%
Indica Intermediate211 99.05% 0.95%
Temperate Japonica335 11.34% 88.66%
Tropical Japonica94 1.06% 98.94%
Japonica Intermediate68 8.82% 91.18%
Group VI/Aromatic14 7.14% 92.86%
Intermediate42 61.90% 38.10%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0211534071 T->C INTERGENIC None