Detailed information of SNP:
|
SNP ID:
sf0211547950(Gbrowse)
Chromosome: chr02 Position: 11547950 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 65.41% | 34.59% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 497 | 9.26% | 90.74% |
| Aus | 54 | 92.59% | 7.41% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 11.64% | 88.36% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211547950 | T->C | LOC_Os02g19730(LOC_Os02g19730.1) | INTRON |