Detailed information of SNP:
|
SNP ID:
sf0211600662(Gbrowse)
Chromosome: chr02 Position: 11600662 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1278 | 86.46% | 13.54% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 361 | 55.68% | 44.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 238 | 70.17% | 29.83% |
| Tropical Japonica | 72 | 20.83% | 79.17% |
| Japonica Intermediate | 51 | 37.25% | 62.75% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211600662 | A->G | INTERGENIC | None |