Detailed information of SNP:
|
SNP ID:
sf0211628820(Gbrowse)
Chromosome: chr02 Position: 11628820 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 59.63% | 40.37% |
| All Indica | 799 | 94.12% | 5.88% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211628820 | T->C | LOC_Os02g19840(LOC_Os02g19840.1) | Synonymous |