Detailed information of SNP:
|
SNP ID:
sf0211725982(Gbrowse)
Chromosome: chr02 Position: 11725982 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 78.44% | 21.56% |
| All Indica | 778 | 62.60% | 37.40% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 365 | 65.48% | 34.52% |
| Indica II | 204 | 66.18% | 33.82% |
| Indica Intermediate | 209 | 54.07% | 45.93% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211725982 | A->G | LOC_Os02g19924(LOC_Os02g19924.1) | INTRON |