Detailed information of SNP:
|
SNP ID:
sf0211745247(Gbrowse)
Chromosome: chr02 Position: 11745247 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1144 | 52.71% | 47.29% |
| All Indica | 553 | 96.56% | 3.44% |
| All Japonica | 493 | 0.61% | 99.39% |
| Aus | 48 | 95.83% | 4.17% |
| Indica I | 258 | 96.12% | 3.88% |
| Indica II | 163 | 97.55% | 2.45% |
| Indica Intermediate | 132 | 96.21% | 3.79% |
| Temperate Japonica | 332 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 36 | 52.78% | 47.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211745247 | T->C | INTERGENIC | None |