Detailed information of SNP:
|
SNP ID:
sf0211784184(Gbrowse)
Chromosome: chr02 Position: 11784184 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 73.84% | 26.16% |
| All Indica | 783 | 59.90% | 40.10% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 365 | 64.66% | 35.34% |
| Indica II | 210 | 62.86% | 37.14% |
| Indica Intermediate | 208 | 48.56% | 51.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211784184 | T->C | LOC_Os02g20010(LOC_Os02g20010.1) | INTRON |