Detailed information of SNP:
|
SNP ID:
sf0211784498(Gbrowse)
Chromosome: chr02 Position: 11784498 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 91.84% | 8.16% |
| All Indica | 791 | 88.12% | 11.88% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 371 | 92.99% | 7.01% |
| Indica II | 210 | 80.95% | 19.05% |
| Indica Intermediate | 210 | 86.67% | 13.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211784498 | T->C | LOC_Os02g20010(LOC_Os02g20010.1) | Synonymous |