Detailed information of SNP:
|
SNP ID:
sf0211784986(Gbrowse)
Chromosome: chr02 Position: 11784986 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 90.23% | 9.77% |
| All Indica | 786 | 87.02% | 12.98% |
| All Japonica | 495 | 97.78% | 2.22% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 369 | 91.87% | 8.13% |
| Indica II | 210 | 80.48% | 19.52% |
| Indica Intermediate | 207 | 85.02% | 14.98% |
| Temperate Japonica | 333 | 96.70% | 3.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211784986 | G->C | LOC_Os02g20010(LOC_Os02g20010.1) | Non-Synonymous SNP |