Detailed information of SNP:
|
SNP ID:
sf0211790172(Gbrowse)
Chromosome: chr02 Position: 11790172 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1385 | 96.97% | 3.03% |
| All Indica | 766 | 94.65% | 5.35% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 363 | 95.59% | 4.41% |
| Indica II | 206 | 95.63% | 4.37% |
| Indica Intermediate | 197 | 91.88% | 8.12% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211790172 | T->C | INTERGENIC | None |