Detailed information of SNP:
|
SNP ID:
sf0211791830(Gbrowse)
Chromosome: chr02 Position: 11791830 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1368 | 51.54% | 48.46% |
| All Indica | 758 | 83.64% | 16.36% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 60 | 85.00% | 15.00% |
| Indica I | 345 | 81.74% | 18.26% |
| Indica II | 208 | 83.65% | 16.35% |
| Indica Intermediate | 205 | 86.83% | 13.17% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 41.03% | 58.97% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211791830 | G->A | LOC_Os02g20020(LOC_Os02g20020.1) | Non-Synonymous SNP |