Detailed information of SNP:
|
SNP ID:
sf0211794492(Gbrowse)
Chromosome: chr02 Position: 11794492 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 97.80% | 2.20% |
| All Indica | 791 | 96.71% | 3.29% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 208 | 92.31% | 7.69% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211794492 | G->C | LOC_Os02g20020(LOC_Os02g20020.1) | Non-Synonymous SNP |