Detailed information of SNP:
|
SNP ID:
sf0211795120(Gbrowse)
Chromosome: chr02 Position: 11795120 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1372 | 94.02% | 5.98% |
| All Indica | 757 | 90.22% | 9.78% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 358 | 91.62% | 8.38% |
| Indica II | 201 | 90.05% | 9.95% |
| Indica Intermediate | 198 | 87.88% | 12.12% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211795120 | T->A | INTERGENIC | None |