Detailed information of SNP:
|
SNP ID:
sf0211826985(Gbrowse)
Chromosome: chr02 Position: 11826985 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 59.17% | 40.83% |
| All Indica | 779 | 32.61% | 67.39% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 50.00% | 50.00% |
| Indica I | 362 | 36.19% | 63.81% |
| Indica II | 212 | 27.83% | 72.17% |
| Indica Intermediate | 205 | 31.22% | 68.78% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211826985 | A->T | LOC_Os02g20080(LOC_Os02g20080.1) | INTRON |