Detailed information of SNP:
|
SNP ID:
sf0211829961(Gbrowse)
Chromosome: chr02 Position: 11829961 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1337 | 65.89% | 34.11% |
| All Indica | 724 | 42.27% | 57.73% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 65 | 49.23% | 50.77% |
| Indica I | 338 | 50.59% | 49.41% |
| Indica II | 195 | 28.72% | 71.28% |
| Indica Intermediate | 191 | 41.36% | 58.64% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211829961 | A->G | INTERGENIC | None |