Detailed information of SNP:
|
SNP ID:
sf0211842210(Gbrowse)
Chromosome: chr02 Position: 11842210 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 93.09% | 6.91% |
| All Indica | 773 | 89.00% | 11.00% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 88.89% | 11.11% |
| Indica I | 364 | 91.48% | 8.52% |
| Indica II | 203 | 87.19% | 12.81% |
| Indica Intermediate | 206 | 86.41% | 13.59% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211842210 | C->T | INTERGENIC | None |