Detailed information of SNP:
|
SNP ID:
sf0211848238(Gbrowse)
Chromosome: chr02 Position: 11848238 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1349 | 87.18% | 12.82% |
| All Indica | 739 | 78.89% | 21.11% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 59 | 77.97% | 22.03% |
| Indica I | 353 | 89.52% | 10.48% |
| Indica II | 198 | 71.72% | 28.28% |
| Indica Intermediate | 188 | 66.49% | 33.51% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211848238 | G->C | LOC_Os02g20110(LOC_Os02g20110.1) | Non-Synonymous SNP |