Detailed information of SNP:
|
SNP ID:
sf0211892314(Gbrowse)
Chromosome: chr02 Position: 11892314 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1348 | 98.59% | 1.41% |
| All Indica | 738 | 97.43% | 2.57% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 353 | 94.62% | 5.38% |
| Indica II | 192 | 100.00% | 0.00% |
| Indica Intermediate | 193 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0211892314 | T->A | INTERGENIC | None |