Detailed information of SNP:
|
SNP ID:
sf0212053941(Gbrowse)
Chromosome: chr02 Position: 12053941 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1369 | 97.59% | 2.41% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 455 | 92.75% | 7.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 321 | 99.07% | 0.93% |
| Tropical Japonica | 81 | 70.37% | 29.63% |
| Japonica Intermediate | 53 | 88.68% | 11.32% |
| Group VI/Aromatic | 10 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212053941 | C->T | INTERGENIC | None |