Detailed information of SNP:
|
SNP ID:
sf0212064518(Gbrowse)
Chromosome: chr02 Position: 12064518 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 98.92% | 1.08% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 462 | 97.19% | 2.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 304 | 96.38% | 3.62% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212064518 | T->A | LOC_Os02g20450(LOC_Os02g20450.1) | Non-Synonymous SNP |