Detailed information of SNP:



SNP ID: sf0212084127(Gbrowse)

Chromosome: chr02

Position: 12084127
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 61.03% 38.97%
All Indica799 98.75% 1.25%
All Japonica497 1.61% 98.39%
Aus67 67.16% 32.84%
Indica I375 99.73% 0.27%
Indica II213 98.59% 1.41%
Indica Intermediate211 97.16% 2.84%
Temperate Japonica335 1.49% 98.51%
Tropical Japonica94 1.06% 98.94%
Japonica Intermediate68 2.94% 97.06%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 57.14% 42.86%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0212084127 T->C INTERGENIC None