Detailed information of SNP:
|
SNP ID:
sf0212113397(Gbrowse)
Chromosome: chr02 Position: 12113397 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1334 | 55.40% | 44.60% |
| All Indica | 724 | 93.23% | 6.77% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 61 | 62.30% | 37.70% |
| Indica I | 344 | 94.19% | 5.81% |
| Indica II | 189 | 95.24% | 4.76% |
| Indica Intermediate | 191 | 89.53% | 10.47% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 38 | 47.37% | 52.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212113397 | T->A | INTERGENIC | None |