Detailed information of SNP:
|
SNP ID:
sf0212125817(Gbrowse)
Chromosome: chr02 Position: 12125817 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1348 | 97.85% | 2.15% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 430 | 93.72% | 6.28% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 290 | 91.38% | 8.62% |
| Tropical Japonica | 82 | 100.00% | 0.00% |
| Japonica Intermediate | 58 | 96.55% | 3.45% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212125817 | C->T | INTERGENIC | None |