Detailed information of SNP:
|
SNP ID:
sf0212130163(Gbrowse)
Chromosome: chr02 Position: 12130163 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 97.55% | 2.45% |
| All Indica | 770 | 95.71% | 4.29% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 355 | 91.27% | 8.73% |
| Indica II | 209 | 100.00% | 0.00% |
| Indica Intermediate | 206 | 99.03% | 0.97% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212130163 | C->T | INTERGENIC | None |