Detailed information of SNP:
|
SNP ID:
sf0212155417(Gbrowse)
Chromosome: chr02 Position: 12155417 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 59.80% | 40.20% |
| All Indica | 798 | 93.48% | 6.52% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212155417 | A->T | INTERGENIC | None |