Detailed information of SNP:



SNP ID: sf0212169166(Gbrowse)

Chromosome: chr02

Position: 12169166
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 96.69% 3.31%
All Indica799 100.00% 0.00%
All Japonica497 90.54% 9.46%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 86.27% 13.73%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0212169166 C->T LOC_Os02g20650(LOC_Os02g20650.1) Synonymous