Detailed information of SNP:
|
SNP ID:
sf0212173678(Gbrowse)
Chromosome: chr02 Position: 12173678 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1333 | 98.05% | 1.95% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 415 | 95.42% | 4.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 283 | 98.94% | 1.06% |
| Tropical Japonica | 75 | 93.33% | 6.67% |
| Japonica Intermediate | 57 | 80.70% | 19.30% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212173678 | G->T | LOC_Os02g20660(LOC_Os02g20660.1) | INTRON |