Detailed information of SNP:
|
SNP ID:
sf0212179933(Gbrowse)
Chromosome: chr02 Position: 12179933 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 79.84% | 20.16% |
| All Indica | 785 | 64.97% | 35.03% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 69.81% | 30.19% |
| Indica II | 208 | 68.27% | 31.73% |
| Indica Intermediate | 206 | 52.91% | 47.09% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212179933 | C->T | INTERGENIC | None |