Detailed information of SNP:
|
SNP ID:
sf0212179959(Gbrowse)
Chromosome: chr02 Position: 12179959 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 79.81% | 20.19% |
| All Indica | 783 | 64.88% | 35.12% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 70.00% | 30.00% |
| Indica II | 208 | 67.79% | 32.21% |
| Indica Intermediate | 205 | 52.68% | 47.32% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212179959 | C->T | INTERGENIC | None |