Detailed information of SNP:
|
SNP ID:
sf0212193588(Gbrowse)
Chromosome: chr02 Position: 12193588 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1294 | 98.92% | 1.08% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 379 | 96.57% | 3.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 253 | 95.65% | 4.35% |
| Tropical Japonica | 66 | 100.00% | 0.00% |
| Japonica Intermediate | 60 | 96.67% | 3.33% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212193588 | C->A | INTERGENIC | None |