Detailed information of SNP:
|
SNP ID:
sf0212281277(Gbrowse)
Chromosome: chr02 Position: 12281277 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1231 | 96.59% | 3.41% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 315 | 93.33% | 6.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 200 | 99.00% | 1.00% |
| Tropical Japonica | 69 | 95.65% | 4.35% |
| Japonica Intermediate | 46 | 65.22% | 34.78% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 37 | 89.19% | 10.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212281277 | C->T | LOC_Os02g20800(LOC_Os02g20800.1) | INTRON |