Detailed information of SNP:
|
SNP ID:
sf0212311196(Gbrowse)
Chromosome: chr02 Position: 12311196 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 55.95% | 44.05% |
| All Indica | 760 | 88.03% | 11.97% |
| All Japonica | 495 | 1.82% | 98.18% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 348 | 86.78% | 13.22% |
| Indica II | 209 | 91.39% | 8.61% |
| Indica Intermediate | 203 | 86.70% | 13.30% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212311196 | A->G | LOC_Os02g20830(LOC_Os02g20830.1) | INTRON |