Detailed information of SNP:
|
SNP ID:
sf0212316460(Gbrowse)
Chromosome: chr02 Position: 12316460 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 96.42% | 3.58% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 476 | 89.71% | 10.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 98.20% | 1.80% |
| Tropical Japonica | 77 | 50.65% | 49.35% |
| Japonica Intermediate | 66 | 92.42% | 7.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212316460 | T->A | LOC_Os02g20840(LOC_Os02g20840.1) | INTRON |