Detailed information of SNP:
|
SNP ID:
sf0212359525(Gbrowse)
Chromosome: chr02 Position: 12359525 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1252 | 57.27% | 42.73% |
| All Indica | 646 | 28.79% | 71.21% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 59 | 13.56% | 86.44% |
| Indica I | 297 | 31.65% | 68.35% |
| Indica II | 176 | 23.86% | 76.14% |
| Indica Intermediate | 173 | 28.90% | 71.10% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 54.05% | 45.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212359525 | C->T | INTERGENIC | None |