Detailed information of SNP:
|
SNP ID:
sf0212421976(Gbrowse)
Chromosome: chr02 Position: 12421976 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 90.35% | 9.65% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 488 | 76.43% | 23.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 329 | 76.60% | 23.40% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 65 | 55.38% | 44.62% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212421976 | G->A | INTERGENIC | None |