Detailed information of SNP:
|
SNP ID:
sf0212510925(Gbrowse)
Chromosome: chr02 Position: 12510925 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1335 | 98.50% | 1.50% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 416 | 95.67% | 4.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 282 | 94.33% | 5.67% |
| Tropical Japonica | 80 | 100.00% | 0.00% |
| Japonica Intermediate | 54 | 96.30% | 3.70% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212510925 | G->A | LOC_Os02g21100(LOC_Os02g21100.1) | INTRON |