Detailed information of SNP:
|
SNP ID:
sf0212545063(Gbrowse)
Chromosome: chr02 Position: 12545063 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 52.68% | 47.32% |
| All Indica | 781 | 84.89% | 15.11% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 65 | 72.31% | 27.69% |
| Indica I | 365 | 85.48% | 14.52% |
| Indica II | 210 | 88.10% | 11.90% |
| Indica Intermediate | 206 | 80.58% | 19.42% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212545063 | C->T | LOC_Os02g21130(LOC_Os02g21130.1) | Synonymous |