Detailed information of SNP:
|
SNP ID:
sf0212556833(Gbrowse)
Chromosome: chr02 Position: 12556833 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 66.60% | 33.40% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 492 | 10.37% | 89.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 331 | 3.02% | 96.98% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212556833 | A->G | INTERGENIC | None |