Detailed information of SNP:
|
SNP ID:
sf0212570407(Gbrowse)
Chromosome: chr02 Position: 12570407 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 95.91% | 4.09% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 88.53% | 11.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212570407 | C->T | LOC_Os02g21190(LOC_Os02g21190.2) | Non-Synonymous SNP |
| sf0212570407 | C->T | LOC_Os02g21190(LOC_Os02g21190.3) | Non-Synonymous SNP |
| sf0212570407 | C->T | LOC_Os02g21190(LOC_Os02g21190.1) | Non-Synonymous SNP |