Detailed information of SNP:
|
SNP ID:
sf0212583195(Gbrowse)
Chromosome: chr02 Position: 12583195 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 96.60% | 3.40% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 463 | 93.30% | 6.70% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 324 | 98.77% | 1.23% |
| Tropical Japonica | 84 | 85.71% | 14.29% |
| Japonica Intermediate | 55 | 72.73% | 27.27% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212583195 | C->T | LOC_Os02g21190(LOC_Os02g21190.2) | INTRON |
| sf0212583195 | C->T | LOC_Os02g21190(LOC_Os02g21190.1) | INTRON |