Detailed information of SNP:
|
SNP ID:
sf0212604987(Gbrowse)
Chromosome: chr02 Position: 12604987 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1362 | 88.99% | 11.01% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 441 | 67.35% | 32.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 285 | 52.28% | 47.72% |
| Tropical Japonica | 90 | 96.67% | 3.33% |
| Japonica Intermediate | 66 | 92.42% | 7.58% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212604987 | G->T | INTERGENIC | None |