Detailed information of SNP:
SNP ID:
sf0212787327(Gbrowse)
Chromosome: chr02 Position: 12787327 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1398 | 98.64% | 1.36% |
All Indica | 799 | 100.00% | 0.00% |
All Japonica | 477 | 96.23% | 3.77% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 334 | 99.70% | 0.30% |
Tropical Japonica | 77 | 85.71% | 14.29% |
Japonica Intermediate | 66 | 90.91% | 9.09% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0212787327 | A->T | INTERGENIC | None |