Detailed information of SNP:
|
SNP ID:
sf0212800516(Gbrowse)
Chromosome: chr02 Position: 12800516 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1395 | 58.06% | 41.94% |
| All Indica | 776 | 91.49% | 8.51% |
| All Japonica | 496 | 1.81% | 98.19% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 362 | 89.78% | 10.22% |
| Indica II | 209 | 96.17% | 3.83% |
| Indica Intermediate | 205 | 89.76% | 10.24% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212800516 | G->A | LOC_Os02g21560(LOC_Os02g21560.1) | INTRON |