Detailed information of SNP:
|
SNP ID:
sf0212825330(Gbrowse)
Chromosome: chr02 Position: 12825330 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1370 | 58.18% | 41.82% |
| All Indica | 757 | 30.38% | 69.62% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 61 | 54.10% | 45.90% |
| Indica I | 358 | 29.05% | 70.95% |
| Indica II | 204 | 29.90% | 70.10% |
| Indica Intermediate | 195 | 33.33% | 66.67% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212825330 | T->A | LOC_Os02g21590(LOC_Os02g21590.1) | Synonymous |