Detailed information of SNP:
|
SNP ID:
sf0212831371(Gbrowse)
Chromosome: chr02 Position: 12831371 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 52.09% | 47.91% |
| All Indica | 772 | 21.89% | 78.11% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 33.33% | 66.67% |
| Indica I | 358 | 24.58% | 75.42% |
| Indica II | 210 | 20.48% | 79.52% |
| Indica Intermediate | 204 | 18.63% | 81.37% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212831371 | A->G | LOC_Os02g21600(LOC_Os02g21600.1) | INTRON |