Detailed information of SNP:
|
SNP ID:
sf0212831483(Gbrowse)
Chromosome: chr02 Position: 12831483 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 51.26% | 48.74% |
| All Indica | 781 | 82.46% | 17.54% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 58 | 82.76% | 17.24% |
| Indica I | 368 | 80.43% | 19.57% |
| Indica II | 207 | 83.57% | 16.43% |
| Indica Intermediate | 206 | 84.95% | 15.05% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 31.71% | 68.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212831483 | A->G | LOC_Os02g21600(LOC_Os02g21600.1) | INTRON |