Detailed information of SNP:
|
SNP ID:
sf0212831514(Gbrowse)
Chromosome: chr02 Position: 12831514 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 51.74% | 48.26% |
| All Indica | 786 | 82.06% | 17.94% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 369 | 79.67% | 20.33% |
| Indica II | 211 | 82.46% | 17.54% |
| Indica Intermediate | 206 | 85.92% | 14.08% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 31.71% | 68.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212831514 | T->C | LOC_Os02g21600(LOC_Os02g21600.1) | Synonymous |