Detailed information of SNP:
|
SNP ID:
sf0212837155(Gbrowse)
Chromosome: chr02 Position: 12837155 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 65.57% | 34.43% |
| All Indica | 781 | 46.48% | 53.52% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 25.76% | 74.24% |
| Indica I | 368 | 53.80% | 46.20% |
| Indica II | 210 | 34.29% | 65.71% |
| Indica Intermediate | 203 | 45.81% | 54.19% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212837155 | G->C | INTERGENIC | None |