Detailed information of SNP:
|
SNP ID:
sf0212840855(Gbrowse)
Chromosome: chr02 Position: 12840855 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 96.38% | 3.62% |
| All Indica | 793 | 97.60% | 2.40% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 61 | 54.10% | 45.90% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 209 | 94.26% | 5.74% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0212840855 | C->A | LOC_Os02g21620(LOC_Os02g21620.1) | Non-Synonymous SNP |